Proton exchange membranes (PEMs), especially for work under intermediate temperatures (100-200 °C), have attracted great interest because of the high CO toleration and facial water management of the corresponding proton exchange membrane fuel cells (PEMFCs). Traditional polymer PEMs faced challenges of low stability and proton carrier leaking. Crystalline porous materials, such as metal-organic frameworks (MOFs) and covalent organic frameworks (COFs), are promising to overcome these issues contributed by nanometer-sized channels. Herein we summarized the recent development of MOF/COF-based intermediate-temperature proton conductors. The strategies of framework engineering and pore impregnation were introduced in detail for raising proton conductivity. The proton-conducting mechanism was described as well. This spotlight will provide new insight into the fabrication of MOF/COF proton conductors under intermediate-temperature and anhydrous conditions.