A Fluorescence-Based Assay for N5 -Carboxyaminoimidazole Ribonucleotide Mutase

Chembiochem. 2023 Sep 15;24(18):e202300347. doi: 10.1002/cbic.202300347. Epub 2023 Aug 16.

Abstract

The enzyme N5 -carboxylaminoinidazole ribonucleotide (N5 -CAIR) mutase is found in microbial de novo purine biosynthesis but is absent in humans making it an attractive antimicrobial target. N5 -CAIR mutase catalyzes the synthesis of carboxyaminoimidazole ribonucleotide (CAIR) from N5 -CAIR which is itself prepared from aminoimidazole ribonucleotide (AIR) by the enzyme N5 -CAIR synthetase. During our research on identifying inhibitors of N5 -CAIR mutase, we developed an innovative, fluorescence-based assay to measure the activity of this enzyme. This assay relies upon our recent serendipitous observation that AIR reversibly reacts with the compound isatin. Reaction of a fluorescently-tagged isatin with AIR resulted in a large increase in fluorescence intensity allowing a measurement of the concentration of AIR in solution. From this observation, we developed a reproducible, non-continuous assay that can replicate the known kinetic parameters of the enzyme and can readily detect a recognized inhibitor of the enzyme. This assay should find utility in screening for inhibitors targeting N5 -CAIR mutase.

Keywords: N5-CAIR mutase; assay development; enzyme inhibitors; screening assays.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Escherichia coli
  • Fluorescence
  • Humans
  • Intramolecular Transferases*
  • Isatin*
  • Ribonucleotides

Substances

  • Ribonucleotides
  • Isatin
  • Intramolecular Transferases