Peripheral immune cell death in sepsis based on bulk RNA and single-cell RNA sequencing

Shanshou Liu; Chujun Duan; Jiangang Xie; Jinxin Zhang; Xu Luo; Qianmei Wang; Xiaoli Liang; Xiaojun Zhao; Ran Zhuang; Wei Zhao; Wen Yin

doi:10.1016/j.heliyon.2023.e17764

Peripheral immune cell death in sepsis based on bulk RNA and single-cell RNA sequencing

Heliyon. 2023 Jun 29;9(7):e17764. doi: 10.1016/j.heliyon.2023.e17764. eCollection 2023 Jul.

Authors

Affiliations

¹ Department of Emergency, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
² Department of Immunology, Fourth Military Medical University, Xi'an, China.

Abstract

Background: Immune cell activation in early sepsis is beneficial to clear pathogens, but immune cell exhaustion during the inflammatory response induces immunosuppression in sepsis. Here, we studied the relationship between immune cell survival status and the prognosis of sepsis patients.

Methods: Sepsis patients admitted to our hospital with a diagnosis time of less than 24 h were recruited. RNA sequencing technologies were used to study functional alterations in various immune cells in peripheral blood mononuclear cells (PBMCs) from sepsis patients. Flow cytometry and electron microscopy were performed to study cell apoptosis and morphological alterations.

Results: A total of 68 sepsis patients with complete data were enrolled and divided into survival (45 patients) and death (23 patients) groups according to their prognosis. Patients in the death group had significantly increased lactic acid levels compared with those in the survival group, but there was no significant difference in other physiological and coagulation functional indicators between the two groups. Bulk RNA sequencing showed that cell death-related pathways and biomarkers were highly enriched and activated in the PBMCs of the death group than that in the survival group. Signs of mitochondrial damage, autophagosomes, cell surface damage and cell surface pore forming were also more pronounced in PBMCs from the death group under electron microscopy. Further single-cell RNA sequencing revealed that cell death occurred mainly in myeloid cells rather than lymphocytes at the early stage of sepsis; cell death patterns of destructive necrosis and pyroptosis were predominant in neutrophils, and apoptosis, autophagy and ferroptosis with less damage to the surroundings were predominant in monocytes.

Conclusion: Cell death mainly occurs in monocytes and neutrophils in the PBMCs of sepsis at the early stage. The study provides a perspective for the immunotherapy of early sepsis targeting immune cell death.

Keywords: Cell death; Immune cells; PBMC; Sepsis; Single-cell RNA sequencing.