Cell-Free RNA Sequencing from Biofluid Samples

Methods Mol Biol. 2023:2695:9-25. doi: 10.1007/978-1-0716-3346-5_2.

Abstract

Liquid biopsy has obvious advantages over invasive sampling methods. Cell-free DNA is now widely used in prenatal and cancer diagnosis. Cell-free RNA is relatively unstable but could contain potential biomarkers, and some studies have demonstrated that cfRNA sequencing may be developed to be a promising diagnostic assay for disease detection. In this chapter, we introduce a modified protocol for the detection of cfRNA based on next-generation sequencing (NGS). This protocol has been specifically optimized for low-input, fragmented cfRNA samples.

Keywords: Liquid biopsy; Low-abundant RNA library construction; cfRNA biomarkers; cfRNA sequencing.

MeSH terms

  • Biomarkers
  • Biomarkers, Tumor / genetics
  • Cell-Free Nucleic Acids* / genetics
  • Female
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Liquid Biopsy / methods
  • Pregnancy
  • RNA / genetics
  • Sequence Analysis, RNA

Substances

  • Cell-Free Nucleic Acids
  • Biomarkers
  • RNA
  • Biomarkers, Tumor