Saccharibacteria (TM7), but not other bacterial taxa, are associated with childhood caries regardless of age in a South China population

PeerJ. 2023 Jun 26:11:e15605. doi: 10.7717/peerj.15605. eCollection 2023.

Abstract

Background: Human microbiome dysbiosis is related to various human diseases, and identifying robust and consistent biomarkers that apply in different populations is a key challenge. This challenge arises when identifying key microbial markers of childhood caries.

Methods: We analyzed unstimulated saliva and supragingival plaque samples from children of different ages and sexes, performed 16S rRNA gene sequencing, and sought to identify whether consistent markers exist among subpopulations by using a multivariate linear regression model.

Results: We found that Acinetobacter and Clostridiales bacterial taxa were associated with caries in plaque and saliva, respectively, while Firmicutes and Clostridia were found in plaque isolated from children of different ages in preschool and school. These identified bacterial markers largely differ between different populations, leaving only Saccharibacteria as a significant caries-associated phylum in children. Saccharibacteria is a newly identified phylum, and our taxonomic assignment database could not be used to identify its specific genus.

Conclusion: Our data indicated that, in a South China population, oral microbial signatures for dental caries show age and sex differences, but Saccharibacteria might be a consistent signal and worth further investigation, considering the lack of research on this microbe.

Keywords: 16S rRNA; Childhood caries; Microbiota; Plaque; Saccharibacteria; Saliva.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Child
  • Child, Preschool
  • China / epidemiology
  • Dental Caries Susceptibility
  • Dental Caries* / epidemiology
  • Female
  • Firmicutes / genetics
  • Humans
  • Male
  • RNA, Ribosomal, 16S / genetics

Substances

  • RNA, Ribosomal, 16S

Grants and funding

This work was supported by grants from the President Foundation of Shenzhen Stomatology Hospital (Pingshan) of Southern Medical University (grant no. 2021A001), the Oral Infectious Disease Mechanism Research and Clinical Translation Application Innovation team of Guangdong Province of China (grant no. 2021KCXTD033) and the Chinese Stomatological Association Dental caries prevention and treatment capacity improvement program (grant no. CSA-ICP2022-03). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.