Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays

Antonie Van Leeuwenhoek. 2023 Sep;116(9):883-892. doi: 10.1007/s10482-023-01852-x. Epub 2023 Jun 20.

Abstract

A Gram-strain positive, aerobic, endospore-forming bacterial strain (JJ-246T) was isolated from the rhizosphere of Zea mays. The 16S rRNA gene sequence similarity comparisons showed a most closely relationship to Paenibacillus oenotherae DT7-4T (98.4%) and Paenibacillus xanthinolyticus 11N27T (98.0%). The pairwise average nucleotide identity and digital DNA-DNA hybridisation values of the JJ-246T genome assembly against publicly available Paenibacillus type strain genomes were below 82% and 33%, respectively. The draft genome of JJ-246T shared many putative plant-beneficial functions contributing (PBFC) genes, related to plant root colonisation, oxidative stress protection, degradation of aromatic compounds, plant growth-promoting traits, disease resistance, drug and heavy metal resistance, and nutrient acquisition. The quinone system of strain JJ-246T, the polar lipid profile and the major fatty acids were congruent with those reported for members of the genus Paenibacillus. JJ-246T was shown to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus plantiphilus sp. nov. is proposed, with JJ-246T (= LMG 32093T = CCM 9089T = CIP 111893T) as the type strain.

Keywords: Endophyte; Paenibacillus plantiphilus; Plant associated; Taxonomy; Zea mays.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism
  • Fatty Acids / metabolism
  • Paenibacillus*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 16S / metabolism
  • Sequence Analysis, DNA
  • Vitamin K 2 / metabolism
  • Zea mays* / microbiology

Substances

  • RNA, Ribosomal, 16S
  • DNA, Bacterial
  • Vitamin K 2
  • Fatty Acids