A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone

Nat Commun. 2023 Jun 10;14(1):3436. doi: 10.1038/s41467-023-39108-x.

Abstract

Oxepinone rings represent one of structurally unusual motifs of natural products and the biosynthesis of oxepinones is not fully understood. 1,5-Seco-vibralactone (3) features an oxepinone motif and is a stable metabolite isolated from mycelial cultures of the mushroom Boreostereum vibrans. Cyclization of 3 forms vibralactone (1) whose β-lactone-fused bicyclic core originates from 4-hydroxybenzoate, yet it remains elusive how 4-hydroxybenzoate is converted to 3 especially for the oxepinone ring construction in the biosynthesis of 1. In this work, using activity-guided fractionation together with proteomic analyses, we identify an NADPH/FAD-dependent monooxygenase VibO as the key enzyme performing a crucial ring-expansive oxygenation on the phenol ring to generate the oxepin-2-one structure of 3. The crystal structure of VibO reveals that it forms a dimeric phenol hydroxylase-like architecture featured with a unique substrate-binding pocket adjacent to the bound FAD. Computational modeling and solution studies provide insight into the likely VibO active site geometry, and suggest possible involvement of a flavin-C4a-OO(H) intermediate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Flavin-Adenine Dinucleotide
  • Flavins
  • Lactones / metabolism
  • Mixed Function Oxygenases*
  • Proteomics*

Substances

  • vibralactone
  • 4-hydroxybenzoic acid
  • Mixed Function Oxygenases
  • Lactones
  • Flavins
  • Flavin-Adenine Dinucleotide