The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease

BMC Pulm Med. 2023 May 17;23(1):167. doi: 10.1186/s12890-023-02408-5.

Abstract

Increasing evidences have demonstrated that pyroptosis exerts key roles in the occurrence, development of chronic obstructive pulmonary disease. However, the mechanisms of pyroptosis in COPD remain largely unknown. In our research, Statistics were performed using R software and related packages in this study. Series matrix files of small airway epithelium samples were downloaded from the GEO database. Differential expression analysis with FDR < 0.05 was performed to identify COPD-associated pyroptosis-related genes. 8 up-regulated genes (CASP4, CASP5, CHMP7, GZMB, IL1B, AIM2, CASP6, GSDMC) and 1 down-regulated genes (PLCG1) was identified as COPD-associated pyroptosis-related genes. Twenty-six COPD key genes was identified by WGCNA analysis. PPI analysis and gene correlation analysis showed their relationship clearly. KEGG and GO analysis have revealed the main pyroptosis-related mechanism of COPD. The expression of 9 COPD-associated pyroptosis-related genes in different grades was also depicted. The immune environment of COPD was also explored. Furthermore, the relationship of pyroptosis-related genes and the expression of immune cells was also be shown in the end. In the end, we concluded that pyroptosis influences the development of COPD. This study may provide new insight into the novel therapeutic targets for COPD clinical treatment.

Keywords: Chronic obstructive pulmonary disease; Development; Immune environment; Occurrence; Pyroptosis-related genes.

MeSH terms

  • Biomarkers, Tumor
  • Caspases
  • Databases, Factual
  • Endosomal Sorting Complexes Required for Transport
  • Epithelium
  • Humans
  • Pore Forming Cytotoxic Proteins
  • Pulmonary Disease, Chronic Obstructive* / genetics
  • Pyroptosis* / genetics

Substances

  • Caspases
  • GSDMC protein, human
  • Biomarkers, Tumor
  • Pore Forming Cytotoxic Proteins
  • CHMP7 protein, human
  • Endosomal Sorting Complexes Required for Transport