Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits

PLoS One. 2023 Apr 27;18(4):e0284656. doi: 10.1371/journal.pone.0284656. eCollection 2023.

Abstract

Microalgal domestication is an expanding research field that aims to multiply and accelerate the potential of microalgae for various biotechnological purposes. We investigated the stability of improved lipid traits and genetic changes of a domesticated strain of the haptophyte Tisochrysis lutea, TisoS2M2, previously obtained by a mutation-selection improvement program. After 7 years of maintenance, TisoS2M2 still displayed improved lipid traits compared with the native strain, demonstrating that a mutation-selection improvement program is suitable for obtaining a domesticated strain with stable, improved phenotype over time. We identified specific genetic variations between the native and domesticated strains and focused on the dynamics of transposable elements (TEs). DNA transposons mainly caused specific TE indels of the domesticated strain TisoS2M2, and some specific TE indels may have impacted genes associated to the neutral lipid pathway. We revealed transposition events for TEs in T. lutea and discussed on the potential role of the improvement program on their activity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Transposable Elements / genetics
  • Haptophyta* / genetics
  • Lipids / genetics
  • Microalgae* / genetics
  • Microalgae* / metabolism
  • Phenotype

Substances

  • DNA Transposable Elements
  • Lipids

Grants and funding

This work was fund by the French Research Institute for Exploitation of the Sea (IFREMER), the French Region of Pays de la Loire with the Atlantic Microalgue program, the DynAlgue ANR JCJC, and LANCOM Pari Scientifique 2020 Pays de La Loire. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.