Discovery of Benzodiazepine-Based Inhibitors of the E2 Enzyme UBCH10 from a Cell-Based p21 Degradation Screen

ACS Chem Biol. 2023 May 19;18(5):1039-1046. doi: 10.1021/acschembio.2c00909. Epub 2023 Apr 25.

Abstract

p21Cip1 (p21) is a universal cyclin-dependent kinase (CDK) inhibitor that halts cell proliferation and tumor growth by multiple mechanisms. The expression of p21 is often downregulated in cancer cells as a result of the loss of function of transcriptional activators, such as p53, or the increased degradation rate of the protein. To identify small molecules that block the ubiquitin-mediated degradation of p21 as a future avenue for cancer drug discovery, we have screened a compound library using a cell-based reporter assay of p21 degradation. This led to the identification of a benzodiazepine series of molecules that induce the accumulation of p21 in cells. Using a chemical proteomic strategy, we identified the ubiquitin-conjugating enzyme UBCH10 as a cellular target of this benzodiazepine series. We show that an optimized benzodiazepine analogue inhibits UBCH10 ubiquitin-conjugating activity and substrate proteolysis by the anaphase-promoting complex.

Publication types

  • Research Support, Non-U.S. Gov't
  • Letter

MeSH terms

  • Benzodiazepines* / pharmacology
  • Cell Nucleus / metabolism
  • Proteomics
  • Ubiquitin / metabolism
  • Ubiquitin-Conjugating Enzymes* / chemistry

Substances

  • Ubiquitin-Conjugating Enzymes
  • Benzodiazepines
  • Ubiquitin

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