Enhanced therapeutic window for antimicrobial Pept-ins by investigating their structure-activity relationship

PLoS One. 2023 Mar 31;18(3):e0283674. doi: 10.1371/journal.pone.0283674. eCollection 2023.

Abstract

The overconsumption and inappropriate use of antibiotics is escalating antibiotic resistance development, which is now one of the 10 top threats to global health. Introducing antibiotics with a novel mode of action into clinical use is urgently needed to address this issue. Deliberately inducing aggregation of target proteins and disrupting protein homeostasis in bacteria via amyloidogenic peptides, also called Pept-ins (from peptide interferors), can be lethal to bacteria and shows considerable promise as a novel antibiotic strategy. However, the translation of Pept-ins into the clinic requires further investigation into their mechanism of action and improvement of their therapeutic window. Therefore, we performed systematic structure modifications of 2 previously discovered Pept-ins, resulting in 179 derivatives, and investigated the corresponding impact on antimicrobial potency, cellular accumulation, and ability to induce protein aggregation in bacteria, in vitro aggregation property, and toxicity on mammalian cells. Our results show that both Pept-in accumulation and aggregation of target proteins in bacteria are requisite for Pept-in mediated antimicrobial activity. Improvement of these two parameters can be achieved via increasing the number of arginine residues, increasing Pept-in aggregation propensity, optimizing the aggregate core structure, adopting β-turn linkers, or forming a disulphide bond. Correspondingly, improvement of these two parameters can enhance Pept-in antimicrobial efficacy against wildtype E. coli BL21 used in the laboratory as well as clinically isolated multidrug-resistant strain E. coli ATCC, A. baumannii, and K. pneumoniae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology
  • Anti-Infective Agents* / pharmacology
  • Bacteria
  • Escherichia coli*
  • Klebsiella pneumoniae
  • Mammals
  • Microbial Sensitivity Tests
  • Structure-Activity Relationship

Substances

  • Anti-Infective Agents
  • Anti-Bacterial Agents

Grants and funding

The Switch Laboratory was supported by grants from H2020 European Research Council Framework Programme ERC Grant agreement 647458 (MANGO) to JS, the Vlaams Instituut voor Biotechnologie, the University of Leuven and its Industrieel Onderzoeksfonds, Internationale Stichting Alzheimer Onderzoek (SAO‐FRA 2019/0015, SAO‐FRA 2020/0009, and SAO-FRA 2020/0013), the Fonds Wetenschappelijk Onderzoek project AKUL/15/34 (Hercules Grant) and Fonds Wetenschappelijk Onderzoek Postdoctoral Fellowships 12P0919N and 12P0922N to NL. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.