Biocatalytic control of site-selectivity and chain length-selectivity in radical amino acid halogenases

Proc Natl Acad Sci U S A. 2023 Mar 21;120(12):e2214512120. doi: 10.1073/pnas.2214512120. Epub 2023 Mar 13.

Abstract

Biocatalytic C-H activation has the potential to merge enzymatic and synthetic strategies for bond formation. FeII/αKG-dependent halogenases are particularly distinguished for their ability both to control selective C-H activation as well as to direct group transfer of a bound anion along a reaction axis separate from oxygen rebound, enabling the development of new transformations. In this context, we elucidate the basis for the selectivity of enzymes that perform selective halogenation to yield 4-Cl-lysine (BesD), 5-Cl-lysine (HalB), and 4-Cl-ornithine (HalD), allowing us to probe how site-selectivity and chain length selectivity are achieved. We now report the crystal structure of the HalB and HalD, revealing the key role of the substrate-binding lid in positioning the substrate for C4 vs C5 chlorination and recognition of lysine vs ornithine. Targeted engineering of the substrate-binding lid further demonstrates that these selectivities can be altered or switched, showcasing the potential to develop halogenases for biocatalytic applications.

Keywords: C-H activation; biocatalysis; bioinorganic chemistry; enzymology; structural biology.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids*
  • Halogenation
  • Lysine*
  • Ornithine

Substances

  • Amino Acids
  • Lysine
  • Ornithine