Not getting in too deep: A practical deep learning approach to routine crystallisation image classification

PLoS One. 2023 Mar 9;18(3):e0282562. doi: 10.1371/journal.pone.0282562. eCollection 2023.

Abstract

Using a relatively small training set of ~16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive computational resources. We show that the classifiers have different strengths that can be combined to provide an ensemble classifier achieving a classification accuracy comparable to that obtained by a large consortium initiative. We use eight classes to effectively rank the experimental outcomes, thereby providing detailed information that can be used with routine crystallography experiments to automatically identify crystal formation for drug discovery and pave the way for further exploration of the relationship between crystal formation and crystallisation conditions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Deep Learning*
  • Neural Networks, Computer*

Associated data

  • Dryad/10.5061/dryad.0k6djhb45

Grants and funding

"JM is funded by an EPSRC CASE Studentship, grant number EP/V519807/1, co-funded by AstraZeneca as CASE partner. YW, CQ and DH are employed by AstraZeneca UK Ltd and support was provided in the form of salaries for these authors."