The Terminal Extensions of Dbp7 Influence Growth and 60S Ribosomal Subunit Biogenesis in Saccharomyces cerevisiae

Int J Mol Sci. 2023 Feb 9;24(4):3460. doi: 10.3390/ijms24043460.

Abstract

Ribosome synthesis is a complex process that involves a large set of protein trans-acting factors, among them DEx(D/H)-box helicases. These are enzymes that carry out remodelling activities onto RNAs by hydrolysing ATP. The nucleolar DEGD-box protein Dbp7 is required for the biogenesis of large 60S ribosomal subunits. Recently, we have shown that Dbp7 is an RNA helicase that regulates the dynamic base-pairing between the snR190 small nucleolar RNA and the precursors of the ribosomal RNA within early pre-60S ribosomal particles. As the rest of DEx(D/H)-box proteins, Dbp7 has a modular organization formed by a helicase core region, which contains conserved motifs, and variable, non-conserved N- and C-terminal extensions. The role of these extensions remains unknown. Herein, we show that the N-terminal domain of Dbp7 is necessary for efficient nuclear import of the protein. Indeed, a basic bipartite nuclear localization signal (NLS) could be identified in its N-terminal domain. Removal of this putative NLS impairs, but does not abolish, Dbp7 nuclear import. Both N- and C-terminal domains are required for normal growth and 60S ribosomal subunit synthesis. Furthermore, we have studied the role of these domains in the association of Dbp7 with pre-ribosomal particles. Altogether, our results show that the N- and C-terminal domains of Dbp7 are important for the optimal function of this protein during ribosome biogenesis.

Keywords: 60S ribosomal subunit; DEAD-box protein; Dbp7; RNA helicase; Saccharomyces cerevisiae; ribosome; ribosome assembly factor.

MeSH terms

  • DEAD-box RNA Helicases / metabolism
  • Nuclear Proteins / genetics
  • RNA Precursors / genetics
  • RNA, Ribosomal / metabolism
  • Ribosomal Proteins / metabolism
  • Ribosome Subunits, Large, Eukaryotic / metabolism
  • Ribosomes / metabolism
  • Saccharomyces cerevisiae Proteins* / metabolism
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Saccharomyces cerevisiae Proteins
  • DEAD-box RNA Helicases
  • RNA, Ribosomal
  • Nuclear Proteins
  • Ribosomal Proteins
  • RNA Precursors
  • DBP7 protein, S cerevisiae