Characterization of the Complete Mitochondrial Genome of a Flea Beetle Luperomorpha xanthodera (Coleoptera: Chrysomelidae: Galerucinae) and Phylogenetic Analysis

Genes (Basel). 2023 Feb 4;14(2):414. doi: 10.3390/genes14020414.

Abstract

In this study, the mitochondrial genome of Luperomorpha xanthodera was assembled and annotated, which is a circular DNA molecule including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA genes (12S rRNA and 16S rRNA), and 1388 bp non-coding regions (A + T rich region), measuring 16,021 bp in length. The nucleotide composition of the mitochondrial genome is 41.3% adenine (A), 38.7% thymine (T), 8.4% guanine (G), and 11.6% cytosine (C). Most of the protein-coding genes presented a typical ATN start codon (ATA, ATT, ATC, ATG), except for ND1, which showed the start codon TTG. Three-quarters of the protein-coding genes showed the complete stop codon TAR (TAA, TAG), except the genes COI, COII, ND4, and ND5, which showed incomplete stop codons (T- or TA-). All the tRNA genes have the typical clover-leaf structure, except tRNASer1 (AGN), which has a missing dihydrouridine arm (DHU). The phylogenetic results determined by both maximum likelihood and Bayesian inference methods consistently supported the monophyly of the subfamily Galerucinae and revealed that the subtribe Luperina and genus Monolepta are polyphyletic groups. Meanwhile, the classification status of the genus Luperomorpha is controversial.

Keywords: leaf beetles; mitochondrion; monophyly; next-generation sequencing; phylogeny.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bayes Theorem
  • Codon, Initiator
  • Codon, Terminator
  • Coleoptera* / genetics
  • Genome, Mitochondrial*
  • Phylogeny
  • RNA, Ribosomal, 16S
  • RNA, Transfer / genetics

Substances

  • Codon, Initiator
  • RNA, Ribosomal, 16S
  • Codon, Terminator
  • RNA, Transfer

Associated data

  • figshare/10.6084/m9.figshare.21957440.v1

Grants and funding

This study was supported by the Guizhou Province Science and Technology Plan Project (Qian Ke He Zhicheng [2021] Yiban221) and Guizhou Province Science and Technology Innovation Talent Team Project (Qian Ke He Pingtai Rencai-CXTD [2021]004).