WGS Data Collections: How Do Genomic Databases Transform Medicine?

Int J Mol Sci. 2023 Feb 3;24(3):3031. doi: 10.3390/ijms24033031.

Abstract

As a scientific community we assumed that exome sequencing will elucidate the basis of most heritable diseases. However, it turned out it was not the case; therefore, attention has been increasingly focused on the non-coding sequences that encompass 98% of the genome and may play an important regulatory function. The first WGS-based datasets have already been released including underrepresented populations. Although many databases contain pooled data from several cohorts, recently the importance of local databases has been highlighted. Genomic databases are not only collecting data but may also contribute to better diagnostics and therapies. They may find applications in population studies, rare diseases, oncology, pharmacogenetics, and infectious and inflammatory diseases. Further data may be analysed with Al technologies and in the context of other omics data. To exemplify their utility, we put a highlight on the Polish genome database and its practical application.

Keywords: COVID-19; WGS; database; genomic databases; whole-genome sequencing.

Publication types

  • Review

MeSH terms

  • Data Collection
  • Exome Sequencing
  • Genome, Human*
  • Genomics
  • Humans
  • Medicine*

Grants and funding

This research was partially funded by the The National Centre for Research and Development project Szpitale Jednoimienne/02/2020 “Development of an innovative diagnostic test to assess the course of COVID-19 and post-death complications with the aid of whole-genome analysis”, as well as The Medical Research Agency project 2020/ABM/COVID19/0022 “A clinical trial in the search for genetic markers responsible for the intensity of the course of the COVID-19 disease, with particular emphasis on patients with accompanying cardiopulmonary diseases”.