Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest

Biodivers Data J. 2022 Oct 14:10:e87254. doi: 10.3897/BDJ.10.e87254. eCollection 2022.

Abstract

Background: The timely and geographical resolutions, as well as the quantity and taxon concepts of records on the occurrence of plants near national borders is often ambiguous. This is due to the regional focus and different approaches of the contributing national and regional databases and networks of the neighbouring countries. Careful data transformation between national data providers is essential for understanding distribution patterns and its dynamics for organisms in areas along the national borders. Sharing occurrence data through the international data aggregator Global Biodiversity Information Facility (GBIF) is also complicated and has to consider that the underlying taxonomic concept and geographic information system of each single GBIF dataset might be different. In addition, some regional data providers have a restrictive (non-cc) licensing policy which does not allow data publication via the GBIF network. Therefore, it is necessary to investigate new ways to make data fit for use for a better and comprehensive understanding of the Flora of the Bohemian Forest.

New information: In this paper, we present a bilateral technical interoperability solution for vascular plant occurrence data for the area between the Czech Republic and Bavaria. We describe the initial state of data providers in both countries and the factual and technical challenges in finding a sustainable concept to establish mutual data sharing. The resulting solution for a functional infrastructure and an agreed data pipeline is described in a step-by-step approach. The new distributed infrastructure allows botanists and other stakeholders from both countries to work within the cross-border context of historical and current plants' distribution.

Keywords: ABCD occurrence data sources; Bohemian Forest; Diversity Workbench repositories.; Flora Silvae Gabretae; Pladias; occurrence data portal; taxon names services; web portal.

Grants and funding

FundingSince 1990 the European Union is supporting territorial cooperations between regions and cities through the program „Interreg“ of the European Regional Development Fund (ERDF). The ERDF focus its investments on projects on infrastructure, the cooperation between public utilities, collaborative actions of companies or activities in the field of environment protection, education, land-use planning and culture. The fifth funding period of the program, i.e., ETC “European Territorial Cooperation” INTERREG V, is regularily set up from 2014 to 2020.The project „Flora des Böhmerwaldes“ is an action to establish a cross-border cooperation between the Free State of Bavaria and the Czech Republic (Ziel ETZ, INTERREG A; EU-project number 216). The applicable project period is from 2019-01-01 up to 2022-06-30. On the part of Bavaria the action is managed by the government of Niederbayern. The focus is set on nature conservation, protection of the environment and the planning of resource efficiency.The financial support called “Ziel ETZ” is approx. 1 million € (in total). There is a co-financing of 15% (from the partner country/region, public support).Additional funding is provided by the Bavarian En­vi­ron­ment Agen­cy (LfU) and the German Research Foundation (DFG) with the NFDI4Biodiversity consortium and GFBio e.V.