The Complete Mitochondrial Genome and Gene Arrangement of the Enigmatic Scaphopod Pictodentalium vernedei

Genes (Basel). 2023 Jan 13;14(1):210. doi: 10.3390/genes14010210.

Abstract

The enigmatic scaphopods, or tusk shells, are a small and rare group of molluscs whose phylogenomic position among the Conchifera is undetermined, and the taxonomy within this class also needs revision. Such work is hindered by there only being a very few mitochondrial genomes in this group that are currently available. Here, we present the assembly and annotation of the complete mitochondrial genome from Dentaliida Pictodentalium vernedei, whose mitochondrial genome is 14,519 bp in size, containing 13 protein-coding genes, 22 tRNA genes and two rRNA genes. The nucleotide composition was skewed toward A-T, with a 71.91% proportion of AT content. Due to the mitogenome-based phylogenetic analysis, we defined P. vernedei as a sister to Graptacme eborea in Dentaliida. Although a few re-arrangements occurred, the mitochondrial gene order showed deep conservation within Dentaliida. Yet, such a gene order in Dentaliida largely diverges from Gadilida and other molluscan classes, suggesting that scaphopods have the highest degree of mitogenome arrangement compared to other molluscs.

Keywords: Dentaliida; Pictodentalium vernedei; Scaphopoda; mitogenome; molluscs; phylogenetic analysis; tusk shells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Gene Order
  • Genome, Mitochondrial*
  • Mitochondria / genetics
  • Mollusca / genetics
  • Phylogeny

Grants and funding

This work was partly supported by the Young Elite Scientists Sponsorship Program by CAST (2021QNRC001), the National Science Foundation of China (No. 32002409), the earmarked fund for Modern Agro-industry Technology Research System (CARS-47).