The Satellite DNA Catalogues of Two Serrasalmidae (Teleostei, Characiformes): Conservation of General satDNA Features over 30 Million Years

Genes (Basel). 2022 Dec 28;14(1):91. doi: 10.3390/genes14010091.

Abstract

Satellite DNAs (satDNAs) are tandemly repeated sequences that are usually located on the heterochromatin, and the entire collection of satDNAs within a genome is called satellitome. Primarily, these sequences are not under selective pressure and evolve by concerted evolution, resulting in elevated rates of divergence between the satDNA profiles of reproductive isolated species/populations. Here, we characterized two additional satellitomes of Characiformes fish (Colossoma macropomum and Piaractus mesopotamicus) that diverged approximately 30 million years ago, while still retaining conserved karyotype features. The results we obtained indicated that several satDNAs (50% of satellite sequences in P. mesopotamicus and 43% in C. macropomum) show levels of conservation between the analyzed species, in the nucleotide and chromosomal levels. We propose that long-life cycles and few genomic changes could slow down rates of satDNA differentiation.

Keywords: cytogenomics; fish cytogenetics; repetitive DNA; satellite DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Characiformes* / genetics
  • DNA, Satellite* / genetics
  • Genomics
  • Karyotype
  • Repetitive Sequences, Nucleic Acid

Substances

  • DNA, Satellite

Grants and funding

This research was funded by grants from the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP), Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ; grant numbers to R.U., 259844 and 248070), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq; grant number to R.U., 305715/2020-8) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES).