AXL inhibitors selected by molecular docking: Option for reducing SARS-CoV-2 entry into cells

Acta Pharm. 2022 Apr 13;72(3):329-343. doi: 10.2478/acph-2022-0024. Print 2022 Sep 1.

Abstract

The COVID-19 pandemic is ongoing and the benefit from vaccines is still insufficient since COVID-19 continues to be dia g-nosed in vaccinated individuals. It is, therefore, necessary to propose specific pharmacological treatments against COVID-19. A new therapeutic target on the human cellular membrane is AXL (anexelekto), proposed as an independent pathway by which interaction with the S protein of SARS-CoV-2 allows the virus to enter the cell, without the participation of ACE2. AXL serves as another gate through which SARS-CoV-2 can enter cells. Therefore, any stage of COVID-19 could be ameliorated by hindering the interaction between AXL and SARS-CoV-2. This study proposes ten compounds (1-10), selected by mole-cu lar docking and using a library of nearly 500,000 compounds, to develop a new drug that will decrease the interaction of AXL with the S protein of SARS-CoV-2. These compounds have a specific potential site of interaction with AXL, between Glu59, His61, Glu70 and Ser74 amino acids. This site is necessary for the interaction of AXL with the S protein. With this, we propose to develop a new adjuvant treatment against COVID-19.

Keywords: AXL ligand; COVID-19; NTD-S1; S protein; SARS-CoV-2; molecular docking.

MeSH terms

  • COVID-19*
  • Humans
  • Molecular Docking Simulation
  • Pandemics
  • Peptidyl-Dipeptidase A / chemistry
  • Peptidyl-Dipeptidase A / metabolism
  • Protein Binding
  • SARS-CoV-2* / metabolism

Substances

  • Peptidyl-Dipeptidase A