Occurrence of variants of unknown clinical significance in genetic testing for hereditary breast and ovarian cancer syndrome and Lynch syndrome: a literature review and analytical observational retrospective cohort study

BMC Med Genomics. 2023 Jan 16;16(1):7. doi: 10.1186/s12920-023-01437-7.

Abstract

Background and purpose: Over the last decade, the implementation of multigene panels for hereditary tumor syndrome has increased at our institution (Inselspital, University Hospital Berne, Switzerland). The aim of this study was to determine the prevalence of variants of unknown significance (VUS) in patients with suspected Lynch syndrome and suspected hereditary breast and ovarian cancer syndrome, the latter in connection with the trend toward ordering larger gene panels.

Results: Retrospectively collected data from 1057 patients at our institution showed at least one VUS in 126 different cases (11.9%). In patients undergoing genetic testing for BRCA1/2, the prevalence of VUS was 6%. When < 10 additional genes were tested in addition to BRCA1/2, the prevalence increased to 13.8%, and 31.8% for > 10 additional genes, respectively. The gene most frequently affected with a VUS was ATM. 6% of our patients who were tested for Lynch syndrome had a VUS result in either MLH1, MSH2 or MSH6.

Conclusions: Our data demonstrate that panel testing statistically significantly increases VUS rates due to variants in non-BRCA genes. Good genetic counseling before and after obtaining results is therefore particularly important when conducting multigene panels to minimize patient uncertainty due to VUS results.

Keywords: BRCA1; BRCA2; Hereditary breast and ovarian cancer; Lynch syndrome; MMR genes; Multigene panel; VUS.

Publication types

  • Review

MeSH terms

  • Breast Neoplasms* / genetics
  • Clinical Relevance
  • Colorectal Neoplasms, Hereditary Nonpolyposis* / genetics
  • Female
  • Genetic Predisposition to Disease
  • Genetic Testing / methods
  • Hereditary Breast and Ovarian Cancer Syndrome* / genetics
  • Humans
  • Observational Studies as Topic
  • Ovarian Neoplasms* / genetics
  • Retrospective Studies