MiR-125b and SATB1-AS1 might be shear stress-mediated therapeutic targets

Gene. 2023 Mar 20:857:147181. doi: 10.1016/j.gene.2023.147181. Epub 2023 Jan 6.

Abstract

The aim of the study was to explore the potential molecular mechanism associated with shear stress on abdominal aortic aneurysm (AAA) progression. This study performed RNA sequencing on AAA patients (SQ), AAA patients after endovascular aneurysm repair (EVAR, SH), and normal controls (NC). Furthermore, we identified the differentially expressed microRNAs (miRNAs), long noncoding RNAs (lncRNAs), and circular RNA (cirRNAs) and constructed competing endogenous RNA (ceRNA) networks. Finally, 164 differentially expressed miRNAs, 179 co-differentially expressed lncRNAs, and 440 co-differentially expressed circRNAs among the three groups were obtained. The differentially expressed miRNAs mainly enriched in 325 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Target genes associated with co-differentially expressed genes among the group of SH, SQ, and NC mainly enriched in 66 KEGG pathways. LncRNA-miRNA-mRNA interactions, including 15 lncRNAs, 63 miRNAs and 57 mRNAs, was constructed. CircRNA-miRNA-mRNA ceRNA network included 79 circRNAs, 21 miRNAs, and 49 mRNAs. Among them, KLRC2 and CSTF1, targeted by miR-125b, participated in cell-mediated immunity regulation. MiR-320-related circRNAs and SATB1-AS1 serving as the sponge of miRNAs, such as has-circ-0129245, has-circ-0138746, and has-circ-0139786, were hub genes in ceRNA network. In conclusion, AAA patients might be benefit from EVAR based on various pathways and some molecules, such as miR-125b and SATB1-AS1, related with shear stress.

Keywords: Abdominal aortic aneurysm; Endovascular aneurysm repair; Molecular mechanism; Noncoding RNA expression profiles; Shear stress.

MeSH terms

  • Aortic Aneurysm, Abdominal* / genetics
  • Blood Vessel Prosthesis Implantation*
  • Endovascular Procedures*
  • Gene Regulatory Networks
  • Humans
  • Matrix Attachment Region Binding Proteins* / genetics
  • MicroRNAs* / genetics
  • MicroRNAs* / metabolism
  • NK Cell Lectin-Like Receptor Subfamily C / genetics
  • RNA, Circular / genetics
  • RNA, Long Noncoding* / genetics
  • RNA, Long Noncoding* / metabolism
  • RNA, Messenger / genetics

Substances

  • KLRC2 protein, human
  • Matrix Attachment Region Binding Proteins
  • MicroRNAs
  • NK Cell Lectin-Like Receptor Subfamily C
  • RNA, Circular
  • RNA, Long Noncoding
  • RNA, Messenger
  • SATB1 protein, human
  • MIRN125 microRNA, human