iTRAQ-Based Proteomic Analysis of APP Transgenic Mouse Urine Exosomes

Int J Mol Sci. 2022 Dec 30;24(1):672. doi: 10.3390/ijms24010672.

Abstract

Alzheimer's disease (AD) is a common dementia disease in the elderly. To get a better understanding of the pathophysiology, we performed a proteomic analysis of the urine exosomes (U-exo) in AD model mice (J20). The polymer precipitation method was used to isolate U-exo from the urine of 3-month-old J20 and wild-type (WT) mice. Neuron-derived exosome (N-exo) was isolated from U-exo by immunoprecipitation. iTRAQ-based MALDI TOF MS/MS was used for proteomic analysis. The results showed that compared to WT, the levels of 61 and 92 proteins were increased in the J20 U-exo and N-exo, respectively. Gene ontology enrichment analysis demonstrated that the sphingolipid catabolic process, ceramide catabolic process, membrane lipid catabolic process, Aβ clearance, and Aβ metabolic process were highly enriched in U-exo and N-exo. Among these, Asah1 was shown to be the key protein in lipid metabolism, and clusterin, ApoE, neprilysin, and ACE were related to Aβ metabolism and clearance. Furthermore, protein-protein interaction analysis identified four protein complexes where clusterin and ApoE participated as partner proteins. Thus, J20 U-exo and N-exo contain proteins related to lipid- and Aβ-metabolism in the early stages of AD, providing a new insight into the underlying pathological mechanism of early AD.

Keywords: Alzheimer’s disease; amyloid beta; iTRAQ; proteomic analysis; urine exosomes.

MeSH terms

  • Alzheimer Disease* / metabolism
  • Amyloid beta-Peptides / metabolism
  • Amyloid beta-Protein Precursor / metabolism
  • Animals
  • Apolipoproteins E / metabolism
  • Clusterin / metabolism
  • Disease Models, Animal
  • Exosomes* / metabolism
  • Mice
  • Mice, Transgenic
  • Proteomics
  • Tandem Mass Spectrometry

Substances

  • Amyloid beta-Peptides
  • Clusterin
  • Apolipoproteins E
  • Amyloid beta-Protein Precursor

Grants and funding

This research received no external funding. The study is entirely supported by internal departmental funding.