"Not-so-popular" orthogonal pairs in genetic code expansion

Protein Sci. 2023 Feb;32(2):e4559. doi: 10.1002/pro.4559.

Abstract

During the past decade, genetic code expansion has been proved to be a powerful tool for protein studies and engineering. As the key part, a series of orthogonal pairs have been developed to site-specifically incorporate hundreds of noncanonical amino acids (ncAAs) into proteins by using bacteria, yeast, mammalian cells, animals, or plants as hosts. Among them, the pair of tyrosyl-tRNA synthetase/tRNATyr from Methanococcus jannaschii and the pair of pyrrolysyl-tRNA synthetase/tRNAPyl from Methanosarcina species are the most popular ones. Recently, other "not-so-popular" orthogonal pairs have started to attract attentions, because they can provide more choices of ncAA candidates and are necessary for simultaneous incorporation of multiple ncAAs into a single protein. Here, we summarize the development and applications of those "not-so-popular" orthogonal pairs, providing guidance for studying and engineering proteins.

Keywords: aminoacyl-tRNA synthetases; genetic code expansion; noncanonical amino acids; orthogonal translation systems; tRNA.

Publication types

  • Review
  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acids / chemistry
  • Amino Acyl-tRNA Synthetases* / chemistry
  • Genetic Code
  • Protein Engineering
  • RNA, Transfer* / genetics
  • RNA, Transfer* / metabolism
  • Saccharomyces cerevisiae / metabolism

Substances

  • RNA, Transfer
  • Amino Acids
  • Amino Acyl-tRNA Synthetases