Structure and function of aldopentose catabolism enzymes involved in oxidative non-phosphorylative pathways

Biotechnol Biofuels Bioprod. 2022 Dec 28;15(1):147. doi: 10.1186/s13068-022-02252-5.

Abstract

Platform chemicals and polymer precursors can be produced via enzymatic pathways starting from lignocellulosic waste materials. The hemicellulose fraction of lignocellulose contains aldopentose sugars, such as D-xylose and L-arabinose, which can be enzymatically converted into various biobased products by microbial non-phosphorylated oxidative pathways. The Weimberg and Dahms pathways convert pentose sugars into α-ketoglutarate, or pyruvate and glycolaldehyde, respectively, which then serve as precursors for further conversion into a wide range of industrial products. In this review, we summarize the known three-dimensional structures of the enzymes involved in oxidative non-phosphorylative pathways of pentose catabolism. Key structural features and reaction mechanisms of a diverse set of enzymes responsible for the catalytic steps in the reactions are analysed and discussed.

Keywords: Aldolase; Aldopentose; Aldose-1-dehydrogenase; Ketoglutarate-semialdehyde dehydrogenase; Lactonase; Non-phosphorylative pathways; Pentose catabolism; Sugar acid dehydratase.

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  • Review

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