Direct tool for quantitative analysis of cell/object dynamic behavior - metastasis and far beyond

Comput Methods Programs Biomed. 2023 Feb:229:107245. doi: 10.1016/j.cmpb.2022.107245. Epub 2022 Nov 14.

Abstract

Introduction: The dynamics and depth of invasion as well as the ability of cancer cells to penetrate the walls of lymphatic or blood vessels represent critical survival-influencing factors in cancer patients. Depending on the cell type and tissue environment, cancer cell invasion differ in terms of motility mechanism and migration modes. Thus, there is the need of effective models allowing not only for single cell invasion potential assessment but also for collective migration and expansive growth evaluation in 3D microenvironment e.g. basement membranes. To meet this task, the specimens should be compared and analyzed in terms of the dynamics of movement and the evolution of the shape.

Objectives: Our main objective was development of the mathematical method that enables fast and credible calculation of parameters of shape and position, namely standard deviations (σX, σY), centroid position (μX, μY) and correlation coefficient ρ, based only on the contour of the aggregate.

Methods: In order to accomplish this goal we measured geometrical properties of aggregates of RGM1 cells seeded in 3D Geltrex basement membrane. Referential microscopic images were taken 24 and 48 h after seeding and cell group dynamics was registered over 8 h periods using time lapse microscopy.

Results: Based on gathered data, we managed to develop and fully test universal numerical tool allowing for estimation of statistical parameters of cell groups and aggregates which then allows for the precise evaluation of their behavior within microenvironment with time.

Conclusion: We conclude, that our tool is suitable for any research on the metastatic potential and motility of cancer cells in a given microenvironment, regardless of the migration mechanism, which together with the advanced analysis like cell single-cell transcriptomic, proteomic, and chromatin accessibility data may allow to identify precise targets for anti-cancer therapies, to predict the degree of malignancy of neoplastic lesions as well as it can be useful during architecting therapeutic strategies. Moreover, the developed tool seems to be broadly applicable for assessment of behavioural dynamics of any population.

Keywords: Anti-cancer therapy; Cancer cells; Cell clonal/aggregate/organoid motility; Correlated bivariate distribution estimation; Metastasis; Reversed mahalanobis problem.

MeSH terms

  • Cell Movement
  • Humans
  • Neoplasms* / pathology
  • Proteomics*
  • Tumor Microenvironment