Shaping bacterial gene expression by physiological and proteome allocation constraints

Nat Rev Microbiol. 2023 May;21(5):327-342. doi: 10.1038/s41579-022-00818-6. Epub 2022 Nov 14.

Abstract

Networks of molecular regulators are often the primary objects of focus in the study of gene regulation, with the machinery of protein synthesis tacitly relegated to the background. Shifting focus to the constraints imposed by the allocation of protein synthesis flux reveals surprising ways in which the actions of molecular regulators are shaped by physiological demands. Using carbon catabolite repression as a case study, we describe how physiological constraints are sensed through metabolic fluxes and how flux-controlled regulation gives rise to simple empirical relations between protein levels and the rate of cell growth.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Extramural

MeSH terms

  • Bacteria* / genetics
  • Bacteria* / metabolism
  • Carbon / metabolism
  • Gene Expression Regulation, Bacterial
  • Genes, Bacterial
  • Protein Biosynthesis
  • Proteome* / genetics
  • Proteome* / metabolism

Substances

  • Proteome
  • Carbon