Three for the Price of One: Concomitant I⋯N, I⋯O, and I⋯π Halogen Bonds in the Same Crystal Structure

Molecules. 2022 Nov 3;27(21):7550. doi: 10.3390/molecules27217550.

Abstract

The ditopic molecule 3-(1,3,5-trimethyl-1H-4-pyrazolyl)pentane-2,4-dione (HacacMePz) combines two different Lewis basic sites. It forms a crystalline adduct with the popular halogen bond (XB) donor 2,3,5,6-tetrafluoro-1,4-diiodobenzene (TFDIB) with a HacacMePz:TFDIB ratio of 2:3. In a simplified picture, the topology of the adduct corresponds to a hcb net. In addition to the expected acetylacetone keto O and pyrazole N acceptor sites, a third and less common short contact to a TFDIB iodine is observed: The acceptor site is again the most electron-rich site of the pyrazole π-system. This iminic N atom is thus engaged as the acceptor in two orthogonal halogen bonds. Evaluation of the geometric results and of a single-point calculation agree with respect to the strength of the intermolecular contacts: The conventional N⋯I XB is the shortest (2.909(4) Å) and associated with the highest electron density (0.150 eÅ-3) in the bond critical point (BCP), followed by the O⋯I contact (2.929(3) Å, 0.109 eÅ-3), and the π contact (3.2157(3) Å, 0.075 eÅ-3). If one accepts the idea of deducing interaction energies from energy densities at the BCP, the short contacts also follow this sequence. Two more criteria identify the short N⋯I contact as the most relevant: The associated C-I bond is significantly longer than the database average, and it is the only intermolecular interaction with a negative total energy density in the BCP.

Keywords: QTAIM; electron density; energy density; halogen bond; hcb net; pyrazole.

MeSH terms

  • Halogens* / chemistry
  • Iodine*
  • Pyrazoles

Substances

  • Halogens
  • Iodine
  • Pyrazoles