Functional Characterization and Synthetic Application of Is2-SDR, a Novel Thermostable and Promiscuous Ketoreductase from a Hot Spring Metagenome

Int J Mol Sci. 2022 Oct 12;23(20):12153. doi: 10.3390/ijms232012153.

Abstract

In a metagenome mining-based search of novel thermostable hydroxysteroid dehydrogenases (HSDHs), enzymes that are able to selectively oxidize/reduce steroidal compounds, a novel short-chain dehydrogenase/reductase (SDR), named Is2-SDR, was recently discovered. This enzyme, found in an Icelandic hot spring metagenome, shared a high sequence similarity with HSDHs, but, unexpectedly, showed no activity in the oxidation of the tested steroid substrates, e.g., cholic acid. Despite that, Is2-SDR proved to be a very active and versatile ketoreductase, being able to regio- and stereoselectively reduce a diversified panel of carbonylic substrates, including bulky ketones, α- and β-ketoesters, and α-diketones of pharmaceutical relevance. Further investigations showed that Is2-SDR was indeed active in the regio- and stereoselective reduction of oxidized steroid derivatives, and this outcome was rationalized by docking analysis in the active site model. Moreover, Is2-SDR showed remarkable thermostability, with an apparent melting temperature (TM) around 75 °C, as determined by circular dichroism analysis, and no significant decrease in catalytic activity, even after 5 h at 80 °C. A broad tolerance to both water-miscible and water-immiscible organic solvents was demonstrated as well, thus, confirming the potential of this new biocatalyst for its synthetic application.

Keywords: biocatalysis; enzyme discovery; functional characterization; ketoreductases; metagenomics; stereoselectivity; steroids.

MeSH terms

  • Cholic Acid
  • Hot Springs*
  • Hydroxysteroid Dehydrogenases / genetics
  • Ketones
  • Metagenome
  • Pharmaceutical Preparations
  • Short Chain Dehydrogenase-Reductases*
  • Solvents
  • Steroids
  • Substrate Specificity
  • Water

Substances

  • Short Chain Dehydrogenase-Reductases
  • Hydroxysteroid Dehydrogenases
  • Ketones
  • Steroids
  • Water
  • Cholic Acid
  • Pharmaceutical Preparations
  • Solvents