USP7 accelerates FMR1-mediated ferroptosis by facilitating TBK1 ubiquitination and DNMT1 deubiquitination after renal ischemia-reperfusion injury

Inflamm Res. 2022 Dec;71(12):1519-1533. doi: 10.1007/s00011-022-01648-1. Epub 2022 Oct 20.

Abstract

Background: Renal ischemia/reperfusion (I/R) leads to acute kidney injury and is associated with cell ferroptosis, an oxidative programmed cell death. This study aims to explore whether USP7 regulates ferroptosis in rat kidneys suffered I/R and the underlying mechanisms.

Methods: Human renal tubular epithelial cells HK-2 were treated with hypoxia/reoxygenation (H/R) to establish a cell model. The expression of ubiquitin specific peptidase 7 (USP7) in H/R-treated cells was determined. USP7 siRNA was transfected into H/R-treated cells, followed by the detection of cell proliferation, iron ion concentration, oxidative stress levels and glutathione peroxidase 4 (GPX4) and solute carrier family 7-member 11 (SLC7A11) protein levels. Western blotting and immunoprecipitation analyses were performed to detect the effects of USP7 on the ubiquitination of TANK-binding kinase 1 (TBK1) and DNA methyltransferase 1 (DNMT1). Then, H/R-treated cells were transfected with USP7 siRNA alone or together with TBK1 siRNA. Co-immunoprecipitation was used to detect binding relationship between TBK1 and FMRP translational regulator 1 (FMR1). The level of DNMT1 and methylation ratio of the FMR1 promoter region were determined with chromatin immunoprecipitation and methylation specific PCR assays, respectively. Furthermore, USP7 siRNA and FMR1 siRNA were transfected alone or together into H/R-treated cells, followed by the detection of cell functions. An I/R rat model was constructed to analyze the effects of USP7 on renal function in rats.

Results: USP7 was significantly upregulated in H/R-treated cells. USP7 interference markedly increased HK-2 cell proliferation and the protein levels of GPX4 and SLC7A11, restrained the iron ion concentration, and ameliorated oxidative stress. USP7 promoted TRIM27-mediated TBK1 ubiquitination and degradation. USP7 inhibition resulted in increased ubiquitination and decreased stability of DNMT1. USP7 was able to recruit DNMT1 to the FMR1 promoter region, which increased promoter methylation rates and suppressed FMR1 expression. TBK1 or FMR1 overexpression could reverse the effects of USP7 on cell functions. Inhibition of USP7 alleviated renal ischemia-reperfusion injury in rats.

Conclusions: USP7 inhibition attenuated I/R-induced renal injury by inhibiting ferroptosis through decreasing ubiquitination of TBK1 and promoting DNMT1-mediated methylation of FMR1.

Keywords: DNMT1; FMR1; Renal ischemia/reperfusion (I/R); TBK1; USP7.

MeSH terms

  • Animals
  • Ferroptosis*
  • Fragile X Mental Retardation Protein / metabolism
  • Humans
  • Iron / metabolism
  • Kidney / metabolism
  • Protein Serine-Threonine Kinases
  • RNA, Small Interfering / metabolism
  • Rats
  • Reperfusion Injury* / metabolism
  • Ubiquitin-Specific Peptidase 7* / metabolism
  • Ubiquitination

Substances

  • FMR1 protein, human
  • Fragile X Mental Retardation Protein
  • Iron
  • Protein Serine-Threonine Kinases
  • RNA, Small Interfering
  • TBK1 protein, human
  • Ubiquitin-Specific Peptidase 7
  • USP7 protein, human
  • DNMT1 protein, human