Mendelian Randomization Study Using Dopaminergic Neuron-Specific eQTL Nominates Potential Causal Genes for Parkinson's Disease

Mov Disord. 2022 Dec;37(12):2451-2456. doi: 10.1002/mds.29239. Epub 2022 Sep 29.

Abstract

Background: Large-scale genome-wide association studies (GWASs) have reported multiple risk variants for Parkinson's disease (PD). However, little is known about how these reported risk variants confer risk of PD.

Objective: To nominate genes whose genetically regulated expression in dopaminergic neurons may have a causal role in PD.

Methods: We conducted a two-sample Mendelian randomization (MR) study by integrating large-scale genome-wide associations and expression quantitative trait loci (eQTL) data from dopaminergic neurons.

Results: MR analysis nominated 10 risk genes whose genetically regulated expression in dopaminergic neurons may have a causal role in PD. These MR significant genes include FAM200B, NDUFAF2, NUP42, SH3GL2, STX1B, CCDC189, KAT8, PRSS36, VAMP4, and ZSWIM7.

Conclusions: We report the first MR study of PD by using dopaminergic neuron-specific eQTL and nominate novel risk genes for PD. Further functional characterization of the nominated risk genes will provide mechanistic insights into PD pathogenesis and potential therapeutic targets. © 2022 International Parkinson and Movement Disorder Society.

Keywords: Mendelian randomization; Parkinson's disease; dopaminergic neurons; expression quantitative trait loci; genome-wide association studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dopaminergic Neurons / metabolism
  • Genetic Predisposition to Disease / genetics
  • Genome-Wide Association Study*
  • Humans
  • Mendelian Randomization Analysis
  • Parkinson Disease* / genetics
  • Parkinson Disease* / metabolism
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci / genetics