Exome Sequencing Identified Molecular Determinants of Retinal Dystrophies in Nine Consanguineous Pakistani Families

Genes (Basel). 2022 Sep 10;13(9):1630. doi: 10.3390/genes13091630.

Abstract

Inherited retinal dystrophies (IRDs) are a heterogeneous group of degenerative disorders of the retina. Retinitis Pigmentosa (RP) is a common type of IRD that causes night blindness and loss of peripheral vision and may progress to blindness. Mutations in more than 300 genes have been associated with syndromic and non-syndromic IRDs. Recessive forms are more frequent in populations where endogamy is a social preference, such as Pakistan. The aim of this study was to identify molecular determinants of IRDs with the common presentation of night blindness in consanguineous Pakistani families. This study included nine consanguineous IRD-affected families that presented autosomal recessive inheritance of the night blindness phenotype. DNA was extracted from blood samples. Targeted exome sequencing of 344 known genes for retinal dystrophies was performed. Screening of nine affected families revealed two novel (c.5571_5576delinsCTAGATand c.471dup in EYS and SPATA7 genes, respectively) and six reported pathogenic mutations (c.304C>A, c.187C>T, c.1560C>A, c.547C>T, c.109del and c.9911_11550del in PDE6A, USH2A, USH2A, NMNAT1, PAX6 and ALMS1 genes, respectively) segregating with disease phenotype in each respective family. Molecular determinants of hereditary retinal dystrophies were identified in all screened families. Identification of novel variants aid future diagnosis of retinal dystrophies and help to provide genetic counseling to affected families.

Keywords: autosomal recessive; homozygous sequence variants; night blindness; retinaldystrophies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cyclic Nucleotide Phosphodiesterases, Type 6 / genetics
  • DNA / genetics
  • DNA Mutational Analysis
  • Exome / genetics
  • Eye Proteins / genetics
  • Humans
  • Nicotinamide-Nucleotide Adenylyltransferase* / genetics
  • Night Blindness* / genetics
  • Pakistan
  • Pedigree
  • Retinal Dystrophies* / diagnosis
  • Retinal Dystrophies* / genetics

Substances

  • EYS protein, human
  • Eye Proteins
  • DNA
  • NMNAT1 protein, human
  • Nicotinamide-Nucleotide Adenylyltransferase
  • Cyclic Nucleotide Phosphodiesterases, Type 6
  • PDE6A protein, human

Grants and funding

This study was financially supported (in part) by the University Research Fund (URF) for the year 2020–2021 (NO.DFBS/2021-URF/ZOO), Quaid-i-Azam University, Islamabad, Pakistanand Retina Research Foundation to R.C.