Applications of CRISPR/Cas13-Based RNA Editing in Plants

Cells. 2022 Aug 27;11(17):2665. doi: 10.3390/cells11172665.

Abstract

The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated (Cas) system is widely used as a genome-editing tool in various organisms, including plants, to elucidate the fundamental understanding of gene function, disease diagnostics, and crop improvement. Among the CRISPR/Cas systems, Cas9 is one of the widely used nucleases for DNA modifications, but manipulation of RNA at the post-transcriptional level is limited. The recently identified type VI CRISPR/Cas systems provide a platform for precise RNA manipulation without permanent changes to the genome. Several studies reported efficient application of Cas13 in RNA studies, such as viral interference, RNA knockdown, and RNA detection in various organisms. Cas13 was also used to produce virus resistance in plants, as most plant viruses are RNA viruses. However, the application of CRISPR/Cas13 to studies of plant RNA biology is still in its infancy. This review discusses the current and prospective applications of CRISPR/Cas13-based RNA editing technologies in plants.

Keywords: CRISPR/Cas13; RNA editing; RNA interference; RNA targeting; type VI CRISPR systems.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • CRISPR-Cas Systems* / genetics
  • Gene Editing
  • Plants / genetics
  • RNA / genetics
  • RNA Editing* / genetics

Substances

  • RNA

Grants and funding

This study was supported in part by funds from USDA-NIFA (2021-70029-36056), FFAR, Texas A&M AgriLife Research Insect-vectored Disease Seed Grants (124185-96210), and the Texas A&M AgriLife Institute for Advancing Health Through Agriculture to K.M. Y.Q. is supported by NSF (IOS-1758745, IOS-2029889, IOS-2132693, and MCB-2141560), USDA-NIFA (2018-33522-28789, 2020-33522-32274, 2020-70029-33161, and 2021-67013-34554), FFAR (21010111), and USAID (22010332).