Small-molecule activators specific to adenine base editors through blocking the canonical TGF-β pathway

Nucleic Acids Res. 2022 Sep 23;50(17):9632-9646. doi: 10.1093/nar/gkac742.

Abstract

Adenine base editors (ABEs) catalyze A-to-G conversions, offering therapeutic options to treat the major class of human pathogenic single nucleotide polymorphisms (SNPs). However, robust and precise editing at diverse genome loci remains challenging. Here, using high-throughput chemical screening, we identified and validated SB505124, a selective ALK5 inhibitor, as an ABE activator. Treating cells with SB505124 enhanced on-target editing at multiple genome loci, including epigenetically refractory regions, and showed little effect on off-target conversion on the genome. Furthermore, SB505124 facilitated the editing of disease-associated genes in vitro and in vivo. Intriguingly, SB505124 served as a specific activator by selectively promoting ABE activity. Mechanistically, SB505124 promotes ABE editing, at least in part, by enhancing ABE expression and modulating DNA repair-associated genes. Our findings reveal the role of the canonical transforming growth factor-β pathway in gene editing and equip ABEs with precise chemical control.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine* / chemistry
  • CRISPR-Cas Systems
  • Gene Editing
  • Genome
  • Humans
  • Transforming Growth Factor beta* / genetics
  • Transforming Growth Factor beta* / metabolism
  • Transforming Growth Factors / metabolism

Substances

  • Transforming Growth Factor beta
  • Transforming Growth Factors
  • Adenine