Water-organizing motif continuity is critical for potent ice nucleation protein activity

Nat Commun. 2022 Aug 26;13(1):5019. doi: 10.1038/s41467-022-32469-9.

Abstract

Bacterial ice nucleation proteins (INPs) can cause frost damage to plants by nucleating ice formation at high sub-zero temperatures. Modeling of Pseudomonas borealis INP by AlphaFold suggests that the central domain of 65 tandem sixteen-residue repeats forms a beta-solenoid with arrays of outward-pointing threonines and tyrosines, which may organize water molecules into an ice-like pattern. Here we report that mutating some of these residues in a central segment of P. borealis INP, expressed in Escherichia coli, decreases ice nucleation activity more than the section's deletion. Insertion of a bulky domain has the same effect, indicating that the continuity of the water-organizing repeats is critical for optimal activity. The ~10 C-terminal coils differ from the other 55 coils in being more basic and lacking water-organizing motifs; deletion of this region eliminates INP activity. We show through sequence modifications how arrays of conserved motifs form the large ice-nucleating surface required for potency.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Outer Membrane Proteins* / chemistry
  • Escherichia coli
  • Pseudomonas
  • Water*

Substances

  • Bacterial Outer Membrane Proteins
  • ice nucleation protein
  • Water

Supplementary concepts

  • Pseudomonas borealis

Associated data

  • figshare/10.6084/m9.figshare.20341440.v1

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