HSP70 Gene Family in Brassica rapa: Genome-Wide Identification, Characterization, and Expression Patterns in Response to Heat and Cold Stress

Cells. 2022 Jul 27;11(15):2316. doi: 10.3390/cells11152316.

Abstract

Heat shock proteins protect plants from abiotic stress, such as salt, drought, heat, and cold stress. HSP70 is one of the major members of the heat shock protein family. To explore the mechanism of HSP70 in Brassica rapa, we identified 28 putative HSP70 gene family members using state-of-the-art bioinformatics-based tools and methods. Based on chromosomal mapping, HSP70 genes were the most differentially distributed on chromosome A03 and the least distributed on chromosome A05. Ka/Ks analysis revealed that B. rapa evolution was subjected to intense purifying selection of the HSP70 gene family. RNA-sequencing data and expression profiling showed that heat and cold stress induced HSP70 genes. The qRT-PCR results verified that the HSP70 genes in Chinese cabbage (Brassica rapa ssp. pekinensis) are stress-inducible under both cold and heat stress. The upregulated expression pattern of these genes indicated the potential of HSP70 to mitigate environmental stress. These findings further explain the molecular mechanism underlying the responses of HSP70 to heat and cold stress.

Keywords: Brassica rapa; HSP70 family genes; expression profiling; genome-wide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brassica rapa* / genetics
  • Brassica rapa* / metabolism
  • Cold-Shock Response / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant
  • Genome, Plant
  • Phylogeny
  • Plant Proteins / genetics
  • Plant Proteins / metabolism

Substances

  • Plant Proteins

Grants and funding

This work was financially supported in part by grants from the Hebei Youth Top Talent Project (BJ2021024), the Natural Science Foundation of Hebei (C2021204049), the International Cooperation Project in the Science and Technology Support Program of Hebei (Grant No. 2019YX023A, 17396315D), Starting Grant from Hebei Agricultural University (YJ2020016).