The chromatin remodeling protein ATRX positively regulates IRF3-dependent type I interferon production and interferon-induced gene expression

PLoS Pathog. 2022 Aug 8;18(8):e1010748. doi: 10.1371/journal.ppat.1010748. eCollection 2022 Aug.

Abstract

The chromatin remodeling protein alpha thalassemia/mental retardation syndrome X-linked (ATRX) is a component of promyelocytic leukemia nuclear bodies (PML-NBs) and thereby mediates intrinsic immunity against several viruses including human cytomegalovirus (HCMV). As a consequence, viruses have evolved different mechanisms to antagonize ATRX, such as displacement from PML-NBs or degradation. Here, we show that depletion of ATRX results in an overall impaired antiviral state by decreasing transcription and subsequent secretion of type I IFNs, which is followed by reduced expression of interferon-stimulated genes (ISGs). ATRX interacts with the transcription factor interferon regulatory factor 3 (IRF3) and associates with the IFN-β promoter to facilitate transcription. Furthermore, whole transcriptome sequencing revealed that ATRX is required for efficient IFN-induced expression of a distinct set of ISGs. Mechanistically, we found that ATRX positively modulates chromatin accessibility specifically upon IFN signaling, thereby affecting promoter regions with recognition motifs for AP-1 family transcription factors. In summary, our study uncovers a novel co-activating function of the chromatin remodeling factor ATRX in innate immunity that regulates chromatin accessibility and subsequent transcription of interferons and ISGs. Consequently, ATRX antagonization by viral proteins and ATRX mutations in tumors represent important strategies to broadly compromise both intrinsic and innate immune responses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents
  • Chromatin
  • Chromatin Assembly and Disassembly
  • Gene Expression
  • Humans
  • Immunity, Innate
  • Interferon Regulatory Factor-3* / genetics
  • Interferon Regulatory Factor-3* / metabolism
  • Interferon-beta / metabolism
  • Interferons / metabolism
  • Mental Retardation, X-Linked
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • X-linked Nuclear Protein / genetics
  • X-linked Nuclear Protein / metabolism
  • alpha-Thalassemia*

Substances

  • Antiviral Agents
  • Chromatin
  • IRF3 protein, human
  • Interferon Regulatory Factor-3
  • Nuclear Proteins
  • Interferon-beta
  • Interferons
  • ATRX protein, human
  • X-linked Nuclear Protein

Supplementary concepts

  • ATR-X syndrome

Grants and funding

This work was supported by the Deutsche Forschungsgemeinschaft (grant numbers STA357/7-1 and STA357/8-1) and the Wilhelm Sander Stiftung (grant number 2016.087.1) to TS. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.