Directed Evolution of (R)-2-Hydroxyglutarate Dehydrogenase Improves 2-Oxoadipate Reduction by 2 Orders of Magnitude

ACS Synth Biol. 2022 Aug 19;11(8):2779-2790. doi: 10.1021/acssynbio.2c00162. Epub 2022 Aug 8.

Abstract

Pathway engineering is commonly employed to improve the production of various metabolites but may incur in bottlenecks due to the low catalytic activity of a particular reaction step. The reduction of 2-oxoadipate to (R)-2-hydroxyadipate is a key reaction in metabolic pathways that exploit 2-oxoadipate conversion via α-reduction to produce adipic acid, an industrially important platform chemical. Here, we engineered (R)-2-hydroxyglutarate dehydrogenase from Acidaminococcus fermentans (Hgdh) with the aim of improving 2-oxoadipate reduction. Using a combination of computational analysis, saturation mutagenesis, and random mutagenesis, three mutant variants with a 100-fold higher catalytic efficiency were obtained. As revealed by rational analysis of the mutations found in the variants, this improvement could be ascribed to a general synergistic effect where mutation A206V played a key role since it boosted the enzyme's activity by 4.8-fold. The Hgdh variants with increased activity toward 2-oxoadipate generated within this study pave the way for the bio-based production of adipic acid.

Keywords: (R)-2-hydroxyacid dehydrogenase; (R)-2-hydroxyadipate; adipic acid; protein engineering; random mutagenesis; saturation mutagenesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adipates* / metabolism
  • Alcohol Oxidoreductases* / genetics
  • Alcohol Oxidoreductases* / metabolism
  • Mutagenesis

Substances

  • Adipates
  • adipic acid
  • Alcohol Oxidoreductases
  • 2-hydroxyglutarate dehydrogenase