A mutation in the putative CRP binding site of the dctA promoter of Salmonella enterica serovar Typhimurium enables growth with low orotate concentrations

Can J Microbiol. 2022 Oct 1;68(10):615-621. doi: 10.1139/cjm-2022-0120. Epub 2022 Aug 3.

Abstract

Salmonella enterica and Escherichia coli use the inner membrane transporter DctA to import the pyrimidine biosynthetic pathway intermediate orotate from the environment. To study the regulation of dctA expression, we used an S. enterica serovar Typhimurium pyrimidine auxotroph to select a mutant that could grow in an otherwise nonpermissive culture medium containing glucose and a low concentration of orotate. Whole genome sequencing revealed a point mutation upstream of dctA in the putative cyclic AMP receptor protein (CRP) binding site. The C→T transition converted the least favourable base to the most favourable base for CRP-DNA affinity. A dctA::lux transcriptional fusion confirmed that the mutant dctA promoter gained responsiveness to CRP even in the presence of glucose. Moreover, dctA expression was higher in the mutant than the wild type in the presence of alternative carbon sources that activate CRP.

Keywords: CRP; Salmonella; cAMP receptor protein; dctA; orotate; protéine réceptrice de l’AMPc.

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Carbon / metabolism
  • Cyclic AMP Receptor Protein / genetics
  • Cyclic AMP Receptor Protein / metabolism
  • Dicarboxylic Acid Transporters / genetics
  • Dicarboxylic Acid Transporters / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins* / genetics
  • Gene Expression Regulation, Bacterial
  • Glucose / metabolism
  • Membrane Transport Proteins / genetics
  • Mutation
  • Pyrimidines / metabolism
  • Salmonella typhimurium* / genetics
  • Serogroup

Substances

  • Bacterial Proteins
  • Cyclic AMP Receptor Protein
  • DctA protein, E coli
  • Dicarboxylic Acid Transporters
  • Escherichia coli Proteins
  • Membrane Transport Proteins
  • Pyrimidines
  • Carbon
  • Glucose