A Method for Rapid and Reliable Molecular Detection of Drought-Response Genes in Sorghum bicolor (L.) Moench Roots

Methods Mol Biol. 2022:2539:223-233. doi: 10.1007/978-1-0716-2537-8_18.

Abstract

Drought is a major environmental stress that limits growth and productivity in agricultural ecosystems limiting crop yield worldwide. Breeding crops for enhanced drought tolerance is a priority to preserve food security on the increasing world population. Recent work in Arabidopsis has shown that vascular brassinosteroid receptor BRL3 (Brassinosteroid insensitive like-3) transcriptionally controls the production of osmoprotectant metabolites that confer drought resistance without penalizing growth, offering new and exciting possibilities for biotechnological improvement of drought-resistant crops. In cereals, understanding transcriptional responses to drought is an essential step for the production of gene-edited drought-resistant cereals. In this chapter, we present a method to analyze the transcriptional responses to drought in Sorghum bicolor (L.) Moench, our cereal of choice. Among the genes we tested, we found that drought marker gene SbDHN1 has a 1000-fold increase only after 1 day of drought, bringing possibilities for the development of molecular sensors for testing drought. Overall, this analysis is useful to set up conditions of high-throughput transcriptomic analysis of drought stressed plants before drought phenotype is observed.

Keywords: Drought; Drought marker genes; Root; Sorghum; qRT-PCR.

MeSH terms

  • Arabidopsis* / genetics
  • Brassinosteroids
  • Droughts
  • Ecosystem
  • Edible Grain
  • Gene Expression Regulation, Plant
  • Plant Breeding
  • Sorghum*
  • Stress, Physiological / genetics

Substances

  • Brassinosteroids