Inhibition of Arenaviridae nucleoprotein exonuclease by bisphosphonate

IUCrJ. 2022 May 28;9(Pt 4):468-479. doi: 10.1107/S2052252522005061. eCollection 2022 Jul 1.

Abstract

Arenaviruses are emerging enveloped negative-sense RNA viruses that cause neurological and hemorrhagic diseases in humans. Currently, no FDA-approved vaccine or therapeutic agent is available except for ribavirin, which must be administered early during infection for optimum efficacy. A hallmark of arenavirus infection is rapid and efficient immune suppression mediated by the exonuclease domain encoded by the nucleoprotein. This exonuclease is therefore an attractive target for the design of novel antiviral drugs since exonuclease inhibitors might not only have a direct effect on the enzyme but could also boost viral clearance through stimulation of the innate immune system of the host cell. Here, in silico screening and an enzymatic assay were used to identify a novel, specific but weak inhibitor of the arenavirus exonuclease, with IC50 values of 65.9 and 68.6 µM for Mopeia virus and Lymphocytic choriomeningitis virus, respectively. This finding was further characterized using crystallographic and docking approaches. This study serves as a proof of concept and may have assigned a new therapeutic purpose for the bisphosphonate family, therefore paving the way for the development of inhibitors against Arenaviridae.

Keywords: Arenaviridae; Lassa virus; Lymphocytic choriomeningitis virus; Mopeia virus; alendronate; compound optimization; exonucleases; metal chelation.

Grants and funding

This work was supported by ANR grants ArenaBunya-L (ANR-11-BSV8-0019) and PANUVI (ANR-18-ASTR-0010–01) and the French Infrastructure for Integrated Structural Biology (FRISBI; ANR-10-INSB-05–01), as well as by the Fondation pour la Recherche Médicale (FRM), the Fondation Infection Mediterranée and the SILVER Large Scale Collaborative Project (grant agreement No. 260644) of the European Union Seventh Framework.