A Rapid Method for Extracting High-Quality DNA from Soils

Methods Mol Biol. 2022:2536:103-107. doi: 10.1007/978-1-0716-2517-0_6.

Abstract

Metagenomics offers the possibility to study the microbial community of soils at large scale, allowing the characterization also of unculturable microorganisms. Availability of high-quality DNA is a prerequisite of this approach. However, since soils have highly heterogeneous physicochemical properties, several parameters need to be considered for the development of the best molecular practices. A method for isolation of high-molecular-weight and good-quality metagenomic DNA from different soil samples is described here. The protocol combines physical and chemical strategies to ensure efficient cell lysis and precipitation of humic impurities-free DNA suitable for downstream processing for metagenomics study.

Keywords: Biodiversity; DNA isolation; Diverse soils; Improved method; Metagenomic DNA.

MeSH terms

  • DNA / genetics
  • DNA, Bacterial / genetics
  • Metagenomics / methods
  • Soil Microbiology*
  • Soil* / chemistry

Substances

  • DNA, Bacterial
  • Soil
  • DNA