Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses

PeerJ. 2022 Jun 10:10:e13551. doi: 10.7717/peerj.13551. eCollection 2022.

Abstract

Strigolactones (SLs) are a novel class of plant hormones that play critical roles in regulating various developmental processes and stress tolerance. Although the SL biosynthetic and signaling genes were already determined in some plants such as Arabidopsis and rice, the information of SL-related genes in grapevine (Vitis vinifera L.) remains largely unknown. In this study, the SL-related genes were identified from the whole grapevine genome, and their expression patterns under salt and drought stresses were determined. The results indicated that the five genes that involved in the SL biosynthesis included one each of the D27, CCD7, CCD8, MAX1 and LBO genes, as well as the three genes that involved in the SL signaling included one each of the D14, MAX2, D53 genes. Phylogenetic analysis suggested that these SL-related proteins are highly conserved among different plant species. Promoter analysis showed that the prevalence of a variety of cis-acting elements associated with hormones and abiotic stress existed in the promoter regions of these SL-related genes. Furthermore, the transcription expression analysis demonstrated that most SL-related genes are involved in the salt and drought stresses response in grapevine. These findings provided valuable information for further investigation and functional analysis of SL biosynthetic and signaling genes in response to salt and drought stresses in grapevine.

Keywords: Bioinformatics analysis; Gene expression; Grapevine; Stress tolerance; Strigolactones.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis* / genetics
  • Droughts*
  • Heterocyclic Compounds, 3-Ring / metabolism
  • Lactones / metabolism
  • Phylogeny
  • Sodium Chloride / metabolism
  • Sodium Chloride, Dietary / metabolism

Substances

  • GR24 strigolactone
  • Lactones
  • Heterocyclic Compounds, 3-Ring
  • Sodium Chloride
  • Sodium Chloride, Dietary

Grants and funding

The present study was supported by the National Natural Science Foundation of China (31972358), the Natural Science Foundation of Shandong Province, China (ZR2018MC022), and the Shandong Provincial Key Research and Development Project (2019JZZY010727 and 2019GNC106147). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.