An essential role for PTIP in mediating Hox gene regulation along PcG and trxG pathways

FEBS J. 2022 Oct;289(20):6324-6341. doi: 10.1111/febs.16541. Epub 2022 Jun 19.

Abstract

During Drosophila development, Polycomb-group and Trithorax group proteins function to ensure correct maintenance of transcription patterns by epigenetically repressing or activating target gene expression. To get a deep insight into the PcG and trxG pathways, we investigated a BRCT domain-containing protein called PTIP, which was generally identified as a transcriptional coactivator and belongs to the TRR complex. At the genome scale, we sorted given PTIP-binding peaks into two groups: PTIP/TRR-cobound and PTIP/PC-cobound peaks. In particular, we found that PTIP mediates the molecular switch between H3K4me3/H3K27ac and H3K27me3 histone modifications at TRR or PC occupied regions. Thus, we suggest that PTIP is a mediator rather than a dedicated co-activator along PcG and trxG pathways. Our hypothesis is further supported by the genetic assay: PTIP interacts genetically with either PcG or TrxG in a dosage-dependent manner, suggesting that PTIP functions as a co-factor of PcG/TrxG proteins. In addition, in accordance with the analysis of ChIP-seq, these genetic interactions correlate with modified ectopic HOX protein levels in imaginal discs, which reveals an essential role for PTIP in PcG-mediated Hox gene repression. Hence, we reveal a novel role for PTIP in the epigenetic regulation of gene expression along PcG and trxG pathways.

Keywords: Drosophila; HOX; PTIP; PcG/trxG; histone modification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Drosophila / genetics
  • Drosophila Proteins* / metabolism
  • Epigenesis, Genetic
  • Gene Expression Regulation
  • Genes, Homeobox / genetics
  • Histone-Lysine N-Methyltransferase / genetics
  • Histone-Lysine N-Methyltransferase / metabolism
  • Histones* / genetics
  • Histones* / metabolism
  • Polycomb Repressive Complex 1 / genetics
  • Polycomb Repressive Complex 1 / metabolism
  • Polycomb-Group Proteins / genetics
  • Polycomb-Group Proteins / metabolism

Substances

  • Drosophila Proteins
  • Histones
  • Polycomb-Group Proteins
  • Histone-Lysine N-Methyltransferase
  • TRR protein, Drosophila
  • Polycomb Repressive Complex 1