A statistical approach to knot confinement via persistent homology

Proc Math Phys Eng Sci. 2022 May 25;478(2261):20210709. doi: 10.1098/rspa.2021.0709.

Abstract

In this paper, we study how randomly generated knots occupy a volume of space using topological methods. To this end, we consider the evolution of the first homology of an immersed metric neighbourhood of a knot's embedding for growing radii. Specifically, we extract features from the persistent homology (PH) of the Vietoris-Rips complexes built from point clouds associated with knots. Statistical analysis of our data shows the existence of increasing correlations between geometric quantities associated with the embedding and PH-based features, as a function of the knots' lengths. We further study the variation of these correlations for different knot types. Finally, this framework also allows us to define a simple notion of deviation from ideal configurations of knots.

Keywords: knots; persistent homology; topological data analysis.