Scarless Recombineering of Phage in Lysogenic State

Methods Mol Biol. 2022:2479:1-9. doi: 10.1007/978-1-0716-2233-9_1.

Abstract

We present a scarless recombineering-based method for introducing multiple point mutations into the genome of a temperate phage. The method uses the λ Red recombineering system to promote exogenous ssDNA oligos to anneal on the prophage lagging strand during host genome replication. DNA repair is suppressed by inducing the expression of a dominant-negative mutant protein of the methyl-directed mismatch repair system. Screening for recombinant cells without a selection marker is feasible due to its high recombination frequency, estimated as more than 40% after six cycles. The method enables scarless editing of the genome of a bacteriophage in 4-5 days.

Keywords: Bacteriophage; Electroporation; Lysogenic; Recombineering; Scarless; Temperate; ssDNA; λ Red.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage lambda* / genetics
  • DNA, Single-Stranded* / genetics
  • Genetic Engineering / methods
  • Lysogeny / genetics
  • Point Mutation
  • Prophages / genetics

Substances

  • DNA, Single-Stranded