Explaining the Varying Patterns of COVID-19 Deaths Across the United States: 2-Stage Time Series Clustering Framework

JMIR Public Health Surveill. 2022 Jul 19;8(7):e32164. doi: 10.2196/32164.

Abstract

Background: Socially vulnerable communities are at increased risk for adverse health outcomes during a pandemic. Although this association has been established for H1N1, Middle East respiratory syndrome (MERS), and COVID-19 outbreaks, understanding the factors influencing the outbreak pattern for different communities remains limited.

Objective: Our 3 objectives are to determine how many distinct clusters of time series there are for COVID-19 deaths in 3108 contiguous counties in the United States, how the clusters are geographically distributed, and what factors influence the probability of cluster membership.

Methods: We proposed a 2-stage data analytic framework that can account for different levels of temporal aggregation for the pandemic outcomes and community-level predictors. Specifically, we used time-series clustering to identify clusters with similar outcome patterns for the 3108 contiguous US counties. Multinomial logistic regression was used to explain the relationship between community-level predictors and cluster assignment. We analyzed county-level confirmed COVID-19 deaths from Sunday, March 1, 2020, to Saturday, February 27, 2021.

Results: Four distinct patterns of deaths were observed across the contiguous US counties. The multinomial regression model correctly classified 1904 (61.25%) of the counties' outbreak patterns/clusters.

Conclusions: Our results provide evidence that county-level patterns of COVID-19 deaths are different and can be explained in part by social and political predictors.

Keywords: COVID-19; SARS-CoV-2; explanatory modeling; multinomial regression; socioeconomic analyses; time series analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19*
  • Cluster Analysis
  • Humans
  • Influenza A Virus, H1N1 Subtype*
  • SARS-CoV-2
  • Time Factors
  • United States / epidemiology