Oligonucleotides containing abasic threoninol-terpyridine residues as potential artificial ribonucleases

Abstract

Artificial ribonucleases, also known as synthetic ribozymes, were synthesized with an internal, stereochemically-pure, abasic threoninol backbone-residue to which the RNA transesterification catalyst copper (II) terpyridine was covalently linked. These oligonucleotide conjugates were constructed to determine if the stereochemistry of the abasic threoninol backbone residue influences the transesterification rate of complementary RNA oligonucleotides. Following synthesis, these compounds were reacted with complementary 28-mer and 159-mer RNA substrates and their relative transesterification efficiencies were determined. The transesterification kinetics were also compared with previously synthesized oligonucleotides that incorporated copper (II) terpyridine via a serinol-residue. It was determined that oligonucleotides that contained copper (II) terpyridine linked via a (2S,3S)-threoninol backbone were more efficient at RNA transesterification than their (2R,3R)-stereoisomer counterpart.

Keywords: Antisense; Artificial ribonuclease; RNA cleavage; Ribozyme mimic; Threoninol; Transesterification.