Identification of a novel d-amino acid aminotransferase involved in d-glutamate biosynthetic pathways in the hyperthermophile Thermotoga maritima

FEBS J. 2022 Oct;289(19):5933-5946. doi: 10.1111/febs.16452. Epub 2022 Apr 8.

Abstract

The hyperthermophilic bacterium Thermotoga maritima has an atypical peptidoglycan that contains d-lysine alongside the usual d-alanine and d-glutamate. We previously identified a lysine racemase involved in d-lysine biosynthesis, and this enzyme also possesses alanine racemase activity. However, T. maritima has neither alanine racemase nor glutamate racemase enzymes; hence, the precise biosynthetic pathways of d-alanine and d-glutamate remain unclear in T. maritima. In the present study, we identified and characterized a novel d-amino acid aminotransferase (TM0831) in T. maritima. TM0831 exhibited aminotransferase activity towards 23 d-amino acids, but did not display activity towards l-amino acids. It displayed high specific activities towards d-homoserine and d-glutamine as amino donors. The most preferred acceptor was 2-oxoglutarate, followed by glyoxylate. Additionally, TM0831 displayed racemase activity towards four amino acids including aspartate and glutamate. Catalytic efficiency (kcat /Km ) for aminotransferase activity was higher than for racemase activity, and pH profiles were distinct between these two activities. To evaluate the functions of TM0831, we constructed a TTHA1643 (encoding glutamate racemase)-deficient Thermus thermophilus strain (∆TTHA1643) and integrated the TM0831 gene into the genome of ∆TTHA1643. The growth of this TM0831-integrated strain was promoted compared with ∆TTHA1643 and was restored to almost the same level as that of the wild-type strain. These results suggest that TM0831 is involved in d-glutamate production. TM0831 is a novel d-amino acid aminotransferase with racemase activity that is involved in the production of d-amino acids in T. maritima.

Keywords: Thermotoga maritima; Amino acid racemase; d-Glutamate; d-amino acid; d-amino acid aminotransferase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / genetics
  • Alanine / metabolism
  • Alanine Racemase* / metabolism
  • Amino Acids* / metabolism
  • Aspartic Acid / genetics
  • Aspartic Acid / metabolism
  • Biosynthetic Pathways
  • Glutamic Acid / metabolism
  • Glutamine / metabolism
  • Glyoxylates
  • Homoserine / metabolism
  • Ketoglutaric Acids
  • Lysine / genetics
  • Lysine / metabolism
  • Peptidoglycan / metabolism
  • Thermotoga maritima / genetics
  • Transaminases / genetics
  • Transaminases / metabolism

Substances

  • Amino Acids
  • Glyoxylates
  • Ketoglutaric Acids
  • Peptidoglycan
  • Glutamine
  • Aspartic Acid
  • Glutamic Acid
  • Homoserine
  • Transaminases
  • Alanine Racemase
  • Lysine
  • Alanine