Separation of light hydrocarbons (C1-C9) represents one of the "seven chemical separations to change the world". Boron clusters can potentially play an important role in chemical separation, due to their unique three-dimensional structures and their ability to promote a potentially rich array of weak noncovalent interactions. Herein, we report the rational design of metallacages with carborane functionality and cooperative dihydrogen binding sites for the highly selective capture of cyclohexane molecules. The metallacage 1, bearing the ligand 2,4,6-tris(4-pyridyl)-1,3,5-triazine (TPT), can produce cyclohexane with a purity of 98.5% in a single adsorption-desorption cycle from an equimolar mixture of benzene and cyclohexane. In addition, cyclohexene molecules can be also encapsulated inside the metallacage 1. This selective encapsulation was attributed to spatial confinement effects, C-H···π interactions, and particularly dihydrogen-bond interactions. This work suggests exciting future applications of carborane cages in supramolecular chemistry for the selective adsorption and separation of alkane molecules and may open up a new research direction in host-guest chemistry.